SE2010767

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5969
  • Medicago truncatula
  • SE2010767
  • Tc1/Mariner
  • St11
  • AC235664:23079-23341
  • TA
  • TACTCCCTCCGTTTCAAAATACATGTCCAAGTCAACCACTTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                              ----GT   ---C    --    ---ATAT   AATGCTCAATTTTGACCGTTAATATCTTTAATTATCCAAAGTAAAAAATTATAAAAATTTAATATTTTGAAAAT
TACTCCCTCCGTTTCAAAATACATGTCCAA      CAA    CACT  TCAC       GGC                                                                          
||||||||||||||||||||||||||||||      |||    ||||  ||||       |||                                                                          A
ATGAGGGAGGCAAAGTTTTATGTACAGGTT      GTT    GTGA  AGTG       TGA                                                                          
                              AAAAAT   ACAC    TA    AACTAAA   AACTGGTATGAAAAATTGATTACATATTTATGTTTATAATCGTACATTCTACAACAAACTAAACAGAGCTGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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