Plant MITE

SE2030769

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5971
Medicago truncatula
SE2030769
hAT
Hat5
MtChr7:16314996-16315299
CATAACAT
G

Secondary structure and sequence

TSD TIR

5'

3'

CATAACATCA       AGTCAGGAATTTTATAGAGCTTGGGCAAAAAATTTATCGCAAAACGTTACTTCCTTCCTGCGAATAATTTCACATTTCTTACGGATATATCTTTCCTGCGGAACCTAAATCCTTGACAAAATCTGCAGGAAATGT
          GTGGCAG                                                                                                                                       
          |||||||                                                                                                                                       G
          TCCCCGC                                                                                                                                       
 TACAATACG       CTCGGTGGGGGTCGATCGGACCCGATCAAAGGTCCGAGCCGAGGTTGAAAAAAACATCGTTTAGGTTGGTAATGATCTTTAAAATCGAAAAGGATGCCTAAATGGACGCCTAAAAATACATTTAAGGCGTCCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030769

CATAACATCAGTGGCAGAGTCAGGAATTTTATAGAGCTTGGGCAAAAAATTTATCGCAAAACGTTACTTCCTTCCTGCGAATAATTTCACATTTCTTACGGATATATCTTTCCTGCGGAACCTAAATCCTTGACAAAATCTGCAGGAAATGTGTTTCCTGCGGAATTTACATAAAAATCCGCAGGTAAATCCGTAGGAAAAGCTAAAATTTCTAGTAATGGTTGGATTTGCTACAAAAAAAGTTGGAGCCGAGCCTGGAAACTAGCCCAGGCTAGCTGGGGGTGGCTCCGCCCCTGCATAACAT

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