Plant MITE

SE2020771

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5973
Medicago truncatula
SE2020771
Mutator
M2
MtChr8:36765971-36766169
AAATTAGAT
TGAGTAGTGATATATGTACAACTTTTTGGTACAATT

Secondary structure and sequence

TSD TIR

5'

3'

AAATTAGA    T        A       - T    GGT      ATAA      ------------------------    -A       A      GA  GG  AAAAAT
        TGAG AGTGATAT TGTACAA C TTTT   ACAATT    TGACAA                        CTTC  ATTTTCT TCTTTT  TT  TC      
        |||| |||||||| ||||||| | ||||   ||||||    ||||||                        ||||  ||||||| ||||||  ||  ||       
        ACTC TTACTATA ACATGTT G AAAA   TGTTAA    ACTGTT                        GAAG  TAAGAGA AGAAGA  AA  AG      
TAGGTTAA    T        A       A T    GAT      -AAA      AAAAGAGAGAGTATGAGTGTAATA    AA       G      AA  AG  AGATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020771

AAATTAGATGAGTAGTGATATATGTACAACTTTTTGGTACAATTATAATGACAACTTCAATTTTCTATCTTTTGATTGGTCAAAAATAATAGAGAGAAAAAAGAAGAGAGAGAATAAGAAGATAATGTGAGTATGAGAGAGAAAATTGTCAAAAAATTGTTAGAAAATGATTGTACAAATATCATTTCTCAAATTGGAT

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