SE2050772

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5974
  • Medicago truncatula
  • SE2050772
  • PIF/harbinger
  • To11
  • MtChr4:25140097-25140350
  • TTA
  • AGGGTGTGTTTGGATGGAGGGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               G          TTTAT               A              A         T      AC     A         A    -------------GCTAACA     AC     AA
  AGGGTGTGTTTGGAT GAGGGTTTAG     GAGGGGAAGGGAGGG AGGGTTTACTTTTC TTTTTAAAT ACGGAC  TATGA ATGTTTTTT AAAA                    TATTA  ATGAT  
  ||||||||||||||| ||||||||||     ||||||||||||||| |||||||||||||| ||||||||| ||||||  ||||| ||||||||| ||||                    |||||  |||||  A
  TCCCACACAAACCTA CTCTCAAATC     CTCCCCTTCCCTCCC TCCCAAATGAAAAG AAAAATTTA TGCCTG  ATATT TACAAAAAG TTTT                    ATAAT  TACTA  
AT               A          -----               C              A         T      AT     G         A    ATTTAATACACACTAACTTA     -A     AC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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