SE2020774

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5976
  • Medicago truncatula
  • SE2020774
  • Mutator
  • M112
  • MtChr8:22413989-22414271
  • TATAAAATA
  • ATAAGGTTAAATATGTTTTTAGTCCCTACAAAATCATGAGTTTTCAAGTTTAGTTCCTATAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAA   A                        C     C         C                  A    AAT   AATTTTAGTCCTCCATATATTGTAGTTTGTAAGAATAGTCTCTATTTTTAAAACATTTTACA
      ATA GGTTAAATATGTTTTTAGTCCCTA AAAAT ATGAGTTTT AAGTTTAGTTCCTATAAA TTTT   GAT                                                              
      ||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||   |||                                                              A
      TAT CCAATTTATACAAAAATCAGGGAT TTTTA TGTTCAAAA TTCAAATCAGGGATGTTT AAAA   TAA                                                              
ATAAAA   C                        A     A         A                  A    --A   GTGAAAATCAGGGATAAACGTAAAATATCCCTGATAAAACCTCTTGATTTTCATAAGTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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