Plant MITE

SE2020776

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5978
Medicago truncatula
SE2020776
Mutator
M148
MtChr2:9524354-9525152
TTTTATCTC
GAGTTTTTCTATTTACACTCCATGTTTTTCTGGTTACATCT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTATCTC              A   T  AT   TT  -     A     --------   -    CTTAAAAGTTTTTTATAATACCAAAATTGTCCTTTTATATAAATTTTCTTAAAACCCTAATTTTATTCATTGTCACTGAGTTTCACCCTCTTCACCCCACAAGCGATCACGATCAAACAATTTGATGTTCAATATCAATCTCCATGAAAATTAAAGAGTGAATCAAAATATTTTTCATCCATACTCAATTGGATATAAGTAAGTGAATTTCTTCTTCTATTTGCAAGTTTCAATTTTTTCCTTCAACTGCACTGATGCACTGTACGATTACGGTTTTAATTTATATTGGTAAAGTTAACTTAAATTCAGTTTAAGTAGGTTCATGTAAACTTAAACTG
         GAGTTTTTCTATTT CAC CC  GTT  TC TGGTT CATCT        AAA TTTT                                                                                                                                                                                                                                                                                                                                                  
         |||||||||||||| ||| ||  |||  || ||||| |||||        ||| ||||                                                                                                                                                                                                                                                                                                                                                   
         CTCAAAAAGATGGA GTG GG  CAA  AG ACCAA GTGGG        GTT TAAT                                                                                                                                                                                                                                                                                                                                                  
CTCTATTTT              C   -  AT   TT  T     C     ATTTTACT   C    GGGAAAGTATTTTAAACTAAAAGTTTTTCGTATAAGGAAGAAAGAACCAATGTGGGGTTTGGGGAGAAGGTTTTGGTATTAAGAGGTTAGCTAGCTAAGACAATACGCTTCTAAAAGTTTTGGTATGAAAGAGTGCAGGTAAGTACCAAAATTTCTTTTAAGCTTCGTTTAGTCCAATCGTTCACAACAAGAAGTTAGTTAACACAAAAAGAAGAATACCCAAGAGTCAAGACGCTAAAACACAAAAGGAACAAGACATTTGAGTTAAATTCATCCAAGTACATTTGAGTCAAATTCATCCAAGTACATTTGAATTAAATTCATCCAAGTACATTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020776

TTTTATCTCGAGTTTTTCTATTTACACTCCATGTTTTTCTGGTTACATCTAAATTTTCTTAAAAGTTTTTTATAATACCAAAATTGTCCTTTTATATAAATTTTCTTAAAACCCTAATTTTATTCATTGTCACTGAGTTTCACCCTCTTCACCCCACAAGCGATCACGATCAAACAATTTGATGTTCAATATCAATCTCCATGAAAATTAAAGAGTGAATCAAAATATTTTTCATCCATACTCAATTGGATATAAGTAAGTGAATTTCTTCTTCTATTTGCAAGTTTCAATTTTTTCCTTCAACTGCACTGATGCACTGTACGATTACGGTTTTAATTTATATTGGTAAAGTTAACTTAAATTCAGTTTAAGTAGGTTCATGTAAACTTAAACTGAGTTTACATGAACCTACTTAAATTAAGTTTACATGAACCTACTTAAACTGAGTTTACATGAACCTACTTAAATTGAGTTTACAGAACAAGGAAAACACAAAATCGCAGAACTGAGAACCCATAAGAAGAAAAACACAATTGATTGAAGAACAACACTTGCTAACCTGATTTGCTTCGAATTTTCTTTAAAACCATGAATGGACGTGAGAAAGTATGGTTTTGAAAATCTTCGCATAACAGAATCGATCGATTGGAGAATTATGGTTTTGGAAGAGGGGTTTGGGGTGTAACCAAGAAAGAAGGAATATGCTTTTTGAAAATCAAATTTTATGAAAGGGTAATCTTGTCATTTTAGGGTGCAACCATGATTAACTAGGGTGCAGGTAGAAAAACTCTTTTATCTC

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