SE2020788

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5990
  • Medicago truncatula
  • SE2020788
  • Mutator
  • M149
  • MtChr6:336294-336689
  • TAAAAATTA
  • TTAGGCTTAATTGCACTTTTGGTCCTCACATTTTTAGCAGCTCACGAAAATGGTCTTGCCTCTTTCAAATCGAACAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAA                           A              C                                    ---    CCCT   CTATCATTTTTTTGCAGCTTTAGTCCTACCCCCTATTTTCACCTCCAAAAACGCACAATTCACCATCTGCAACAAGCTCCAACAGTTCACCATCATTGTTTA
      TTAGGCTTAATTGCACTTTTGGTCCTC CATTTTTAGCAGCT ACGAAAATGGTCTTGCCTCTTTCAAATCGAACAAAA   CTGT    AAA                                                                                                      
      ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||    |||                                                                                                      G
      AATCCGAATTAACGTGAAAACCAGGAG GTAAAAATCGTCGA TGCTTTTACCAGGACGGAGAAAGTTTAGCTTGTTTT   ATCA    GGA                                                                                                      
ATTAAA                           C              A                                    AAC    ----   TGGGGGATAAAAGTGGCGATTTTTGCGTGTCAAGTGGTAGACGTTGTTCGAAATTGTCAAGTGGTCGTGGATTTTAAGAGTAAAGTCGCACCTGAATTCGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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