Plant MITE

SE2010793

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5995
Medicago truncatula
SE2010793
Tc1/Mariner
St16
MtChr8:28317711-28318000
TA
TACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAG

Secondary structure and sequence

TSD TIR

5'

3'

                               T  CCAAAAAAAAA     TT  --------  A -   TTTAACTTTCAGTTTGCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTTCAATTAATACTATATACACTACTTCCAAAG
TACTCCCTCCGTTTCAAAATGAGTGTCGTTT AG           ATTGT  CA        AA T GAA                                                                                    
||||||||||||||||||||||||||||||| ||           |||||  ||        || | |||                                                                                     
ATGAGGGAGGCAAAGTTTTACTTACAGCAAA TC           ATATG  TG        TT T CGT                                                                                    
                               T  ------AAAAA     --  TATAATTC  - A   AATTAATTTTCTTTCTCTCTACAATAAAATGGTTAAATAGTATTAGTTGATAACCAAACAAAAAGTAATTTCTTTTTTTATTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010793

TACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAGCCAAAAAAAAAATTGTTTCAAAATGAATTTAACTTTCAGTTTGCAATGCAATAATAACTTTTTCTTTTCAATTGTACCCTTCAATTAATACTATATACACTACTTCCAAAGTATTATTTTTTTCTTTAATGAAAAACAAACCAATAGTTGATTATGATAAATTGGTAAAATAACATCTCTCTTTCTTTTAATTAATGCATTTCTTAATATGTGTATAAAAAACTTAAACGACATTCATTTTGAAACGGAGGGAGTA

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