SE2020795

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5997
  • Medicago truncatula
  • SE2020795
  • Mutator
  • M56
  • MtChr3:35697966-35698173
  • ATATATAAT
  • TATATAATGAGAAATGCTAAGAACACTCTCTTTCTAGCACTCACTCTAACACTCACTCTCCTATTGGATTAAACACATGTGGGTCTCACCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      A    AAA     A                      A                 C      ATT   CA         CT  -C    TTAT    G
  TATATA TGAG   TGCTA GAACACTCTCTTTCTAGCACTC CTCTAACACTCACTCTC TATTGG   AAA  CATGTGGGT  CA  CATT    GTGG 
  |||||| ||||   ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||   |||  |||||||||  ||  ||||    |||| G
  ATATAT ACTC   ACGAT CTTGTGAGAGAAAGATTGTGAG GAGGTTGTGAGTGAGAG ATAACC   TTT  GTACACCCA  GT  GTAA    TACC 
TA      -    CTC     A                      A                 A      CAC   AA         TC  AT    CCTT    T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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