SE2020796

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5998
  • Medicago truncatula
  • SE2020796
  • Mutator
  • M150
  • MtChr5:23771926-23772278
  • AAATTTTAG
  • TTTAGGCTTAATTAATGATGTAGTCTATTAAGTTATTTGTTGGTTACATTTTAGTCCCATAAGTTATTAATGTTACAATTTGGTCCCTTTAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAT                   GTA    A                         A  C                                 T    CATCTTCCGTCAAG           C         --AACC     GCC     C    GT  A       T CAA T  TCA
    TTTAGGCTTAATTAATGAT   GTCT TTAAGTTATTTGTTGGTTACATTTT GT CCATAAGTTATTAATGTTACAATTTGGTCCCTT AAGT              CAAATAAATCT CACCGTCAA      GTTAA   AATGT TAAG  GG TACATGT G   G TG   
    |||||||||||||||||||   |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||              ||||||||||| |||||||||      |||||   ||||| ||||  || ||||||| |   | ||    
    AAATCCGAATTAATTACTA   CAGG AATTCAATAAACAACCAATGTAAAA CA GGTATTCAATAATTGCAATGTTAAACCAGGGAA TTCA              GTTTATTTAGG GTGGCAGTT      CAGTT   TTGCA ATTT  CC GTGTACA C   C AC   
TTTT                   AAC    G                         C  A                                 -    ATCATATACAATCG           A         AGAAAA     ---     -    AT  -       - TTG C  TGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3