Plant MITE

SE2030801

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6003
Medicago truncatula
SE2030801
hAT
Hat2
MtChr6:4465364-4465566
ATGAAAAC
CTATGAAGCACGGATACT

Secondary structure and sequence

TSD TIR

5'

3'

ATGAAAAC             A    GACA    CACCG  CACGACACGGACACTAACACGCCGACACAGCTAATAATTTGAAAAAATCACAAAATTCAGTG
        CTATGAAGCACGG TACT    CGGA     GA                                                              
        ||||||||||||| ||||    ||||     ||                                                               
        GATACTTCGTGCC GTGA    GCCT     CC                                                              
CAAAAGTA             C    -GGA    --AAT  ACACAGGGCCACAGCCTGTGTGCAACACAGGCTGTGGCTGTGCTGTGGCTGTGAACATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030801

ATGAAAACCTATGAAGCACGGATACTGACACGGACACCGGACACGACACGGACACTAACACGCCGACACAGCTAATAATTTGAAAAAATCACAAAATTCAGTGTAATTACAAGTGTCGGTGTCGTGTCGGTGTCGGACACAACGTGTGTCCGACACCGGGACACACCTAATCCGAGGAGTGCCCGTGCTTCATAGATGAAAAC

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