SE2020802

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6004
  • Medicago truncatula
  • SE2020802
  • Mutator
  • M140
  • MtChr5:12033512-12033903
  • TAAAAATTA
  • TTAGGTTTAATAGCAGTTCTGCCCCCATAAGTATTAAAAAGTTATAATTTTGGTCCCTTAACAAAATAAAATACAATCCAGCACCCTAAGTACTGCCTCTTTTGTAGTTTTGGCCCTAGACCAATTTTGACCAAGTCAATGCTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAA                -  CT  C   A         AA     A                                      A    A                       G     ---  A                     C   CATGAA  T       A           ATCAAAAAT      TA
      TTAGGTTTAATAGCAG TT  GC CCC TAAGTATTA  AAGTT TAATTTTGGTCCCTTAACAAAATAAAATACAATCCAGC CCCT AGTACTGCCTCTTTTGTAGTTTT GCCCT   AG CCAATTTTGACCAAGTCAATG TAA      CG CACGTGT TAATTTTTTTA         AGAAAA  
      |||||||||||||||| ||  || ||| |||||||||  ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||   || ||||||||||||||||||||| |||      || ||||||| |||||||||||         ||||||   
      AATCCAAATTATCGTC AA  TG GGG ATTTATAGT  TTTAA GTTAAAATCGGGGGATTGTTTTATTTTATGTTAGGTCG GGGA TCATGACGGAGAAAACGTCAAAA CGGGG   TC GGTTAAAACTGGTTCAGTTAC ATT      GC GTGCACA ATTAAAAAAAT         TTTTTT  
ATTAAA                C  AC  T   -         AC     C                                      A    C                       A     AGT  -                     A   ACAACG  -       C           -AAAAATTT      TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End