SE2020803

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6005
  • Medicago truncatula
  • SE2020803
  • Mutator
  • M78
  • MtChr1:6904788-6905063
  • ATATAATAT
  • ATATAATATTGAGTAAACCATCAAATTAGTCACTATCTTTGTACCAAATTCTTAATTTGGTCCTAACTCTATTAATAATTTAAAATCGTCACTGTCATTGTCAAACGTTTTTTAGTTAGGTCCCTCGGTTAGTAAATCATTTACAAAGACAGACACCATTTTGAGAAACGTTTGACAAAGATAGAGACCATTTTAAGTTATTAATAGAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
     A    T                 A   A  ATC      C           T      -CTA                     C   A     A                  TTA   CCC  G   --A     T
 ATAT ATAT GAGTAAACCATCAAATT GTC CT   TTTGTA CAAATTCTTAA TTGGTC    ACTCTATTAATAATTTAAAAT GTC CTGTC TTGTCAAACGTTTTTTAG   GGT   TC GTT   GTAAA 
 |||| |||| ||||||||||||||||| ||| ||   |||||| ||||||||||| ||||||    ||||||||||||||||||||| ||| ||||| ||||||||||||||||||   |||   || |||   ||||| C
 TGTA TATA CTCATTTGGTAGTTTAA CAG GA   AAACAT GTTTAAGAGTT GACCAG    TGAGATAATTATTGAATTTTA CAG GATAG AACAGTTTGCAAAGAGTT   CCA   AG CAG   CATTT 
T    A    -                 C   A  CAT      T           T      AAGC                     C   A     A                  TTA   --C  A   AAA     A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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