Plant MITE

SE2020804

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6006
Medicago truncatula
SE2020804
Mutator
M9
MtChr4:593331-593658
TATTTTTAG
AGGCTTAATAGCAGTTTTAGCCCCATAACTTTCCTAAAGTTGCGATTTTGGCCTCATAAGAAAAAAAAACTACAAAACCATCCATAAGTTTTGCAACTGTAACAGTTTTGGCCCCCAAGGCCAA

Secondary structure and sequence

TSD TIR

5'

3'

 TATTTTT      A                 A       C                    -   T        AAA          -CA   A           AC   AA                      AAAAAAAAAAAAAAAAAAC   TGGACCTCACTTAGGGTG
        AGGCTT ATAGCAGTTTTAGCCCC TAACTTT CTAAAGTTGCGATTTTGGCC TCA AAGAAAAA   ACTACAAAAC   TCC TAAGTTTTGCA  TGT  CAGTTTTGGCCCCCAAGGCCAA                   ACG                  
        |||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||   ||||||||||   ||| |||||||||||  |||  ||||||||||||||||||||||                   |||                  C
        TCCGAA TATCGTCAAAATCGGGG ATTGAAA GGTTTCAACGCTAAAACCGG AGT TTCTTTTT   TGATGTTTTG   GGG ATTCAAAACGT  ACA  GTCAAAACCGGGGGTTCCGGTT                   CTG                  
ATTTTTAT      C                 G       A                    G   -        --C          ACG   G           GT   CC                      ---------------AAAA   AGCCAGATGCGACTGCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020804

TATTTTTAGGCTTAATAGCAGTTTTAGCCCCATAACTTTCCTAAAGTTGCGATTTTGGCCTCATAAGAAAAAAAAACTACAAAACCATCCATAAGTTTTGCAACTGTAACAGTTTTGGCCCCCAAGGCCAAAAAAAAAAAAAAAAAAAACACGTGGACCTCACTTAGGGTGCCACGTCAGCGTAGACCGAGTCAAAATTGGCCTTGGGGGCCAAAACTGCCACATGTGCAAAACTTAGGGGGCAGTTTTGTAGTCTTTTTCTTTGAGGGCCAAAATCGCAACTTTGGAAAAGTTAGGGGGCTAAAACTGCTATCAAGCCTTATTTTTA

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