Plant MITE

SE2050806

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6008
Medicago truncatula
SE2050806
PIF/harbinger
To25
MtChr6:20711435-20711715
TTA
AGTGTATGTTTGGT

Secondary structure and sequence

TSD TIR

5'

3'

TT      TG          C   GAGAAAAA      - TT   --- G    GA    GATTAAAATTGGGTTGAAGCTAAAGTGATTTATGTTTGGTTATATTTATGTAAAAGTGGGTTTAACAATAAGTTTGATTGTAAAAGTT
  AGTGTA  TTTGGTTGTA GGT        TTATTT T  GAG   T AATT  TTAT                                                                                        
  ||||||  |||||||||| |||        |||||| |  |||   | ||||  ||||                                                                                        A
  TCACAT  AGACCAAGGC GAA        CCTCCT G  GTT   A CTAA  GATG                                                                                        
AT      TA          -   ------AA      C --   GCA -    --    TCCACATCTTAACTAAAACTGTACAAACCAAGGAGGCCATCTTAACTAAGATGATATTCGATCTTTAACATCCAAGAGTAAGATCTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050806

TTAGTGTATGTTTGGTTGTACGGTGAGAAAAATTATTTTTTGAGTGAATTGATTATGATTAAAATTGGGTTGAAGCTAAAGTGATTTATGTTTGGTTATATTTATGTAAAAGTGGGTTTAACAATAAGTTTGATTGTAAAAGTTAATTCTAGAATGAGAACCTACAATTTCTAGCTTATAGTAGAATCAATTCTACCGGAGGAACCAAACATGTCAAAATCAATTCTACACCTGTAGAATCAACGTTGGCTCCTCCAAAAGCGGAACCAGAATTACACTTA

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