SE2050807

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6009
  • Medicago truncatula
  • SE2050807
  • PIF/harbinger
  • To11
  • MtChr5:15868051-15868299
  • TTA
  • AGGGTGTGTTTGGAAAGAGGGTTTAGGAGGGGAAGGGAGGGGAGGACTTAATTTTCTTTTTTAATTTACAGACATTATAAAATGACTTTTAAAAAATTGAATTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              AA                             A    A    C        T    A    TTA       A     A    AT        CAACA      ATGATCA
  AGGGTGTGTTTGGA  GAGGGTTTAGGAGGGGAAGGGAGGGGAGG CTTA TTTT TTTTTTAA TTAC GACA   TAAAATG CTTTT AAAA  TGAATTAA     TTTAAA       
  ||||||||||||||  ||||||||||||||||||||||||||||| |||| |||| |||||||| |||| ||||   ||||||| ||||| ||||  ||||||||     ||||||       T
  TCCCACACAAACCT  CTCCCAAATCCTCCCCTTCCTTCTCCTCC GAGT AAAA AAAAAATT AATG TTGT   ATTTTAC GAAAA TTTT  ATTTAATT     AAATTT       
AT              AA                             C    G    T        T    C    TAC       A     A    --        CACAA      CATAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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