SE2020808

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6010
  • Medicago truncatula
  • SE2020808
  • Mutator
  • M4
  • MtChr8:34185733-34186126
  • TTAAAACAA
  • AAGGGTTAATAGTGTTTTACCCCCCTGTAATATAGGTCATTTCCGGTTTTCCCCCCTGTAAAATATTTTTTTTGAATTTCATCCTTGTAATTTGAAGATTTTTTGGTTTTGGACCTTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAC                                                  C               T             A              A       T                 GA      CA TCCCTGTAATTTGAGCAAATTTAGGTTTACCCCCTTGTAATTTGAGAAAATTTCGGTTTA
       AAGGGTTAATAGTGTTTTACCCCCCTGTAATATAGGTCATTTCCGGTTTT CCCCCTGTAAAATAT TTTTTTGAATTTC TCCTTGTAATTTGA GATTTTT GGTTTTGGACCTTCATG  AAATTT  C                                                            
       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||  ||||||  |                                                            C
       TTCCCAATTATCACAAAATGGGGGGACATTATATCCAGTAAAGGCCAAAA GGGGGACATTTTATA AAAAAACTTAAAG AGGAACATTAAACT CTAAAAA CCAAAACCTGGAAGTAC  TTAAAA  C                                                            
AACAAAA                                                  T               T             C              A       -                 --      -- TGTCATGTTTTAGCTTCTATACTATCCCCCATTTGGCTTTAAACGAGTTTAATTGCCCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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