Plant MITE

SE2030809

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6011
Medicago truncatula
SE2030809
hAT
Hat21
MtChr1:24054225-24054624
ATAAAATG
A

Secondary structure and sequence

TSD TIR

5'

3'

           AT   -  GC  ---      CC         T  AAA  GCTCAACAGAGCTGGGCCTCCCTCAGTCATGGGCCTCAATTTTTTTTTTAATACCCACTAGTACTACTGCCCTCTAAATTTTTTTTAATACCCCCAGCCATTTTCTGTCCCCTTGTTTTAGCCTTTTAGGTCTATTAGAATTAGATCATCTTGCTTTTGG
             AAA AT  AG   GCCCGT  CTGAGGGGG GC   CA                                                                                                                                                                
             ||| ||  ||   ||||||  ||||||||| ||   ||                                                                                                                                                                T
             GGC GG  GA   TTAAGC  CTCCGAGCT GA   GA                                                                                                                                                                
GTAAAATAGTCCC   A  --  TTC      --         -  ---  CTCTTACTTTTCTCCAGTCACTATTTTAGTTTTGCATAAAAAATTTTTTTTTCATTACTAGATAAATATAAAAAATTTTCTATTTATATTCCACAGCATATATACGCCATGTGGGTTTCCATTTTTACTGATGGCATATGTACTTCTTGGAGGTGGATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030809

ATAAAATGCAGGCCCGTCCCTGAGGGGGTGCAAACAGCTCAACAGAGCTGGGCCTCCCTCAGTCATGGGCCTCAATTTTTTTTTTAATACCCACTAGTACTACTGCCCTCTAAATTTTTTTTAATACCCCCAGCCATTTTCTGTCCCCTTGTTTTAGCCTTTTAGGTCTATTAGAATTAGATCATCTTGCTTTTGGTGTTAGGTGGAGGTTCTTCATGTATACGGTAGTCATTTTTACCTTTGGGTGTACCGCATATATACGACACCTTATATTTATCTTTTAAAAAATATAAATAGATCATTACTTTTTTTTTAAAAAATACGTTTTGATTTTATCACTGACCTCTTTTCATTCTCAGAGTCGAGCCTCCGAATTCTTAGGGACGGCCCTGATAAAATG

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