SE2030811

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6013
  • Medicago truncatula
  • SE2030811
  • hAT
  • Hat12
  • MtChr5:12548745-12549417
  • GGCAGATC
  • GATCTAGGGGTGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
 GGCA A             AAAAC     - AATT AATAGAAAAACCGCAAATCAAACCAATCCAAACTGAAACCGCAAAAAACCGCACTTGGTTCAGATGAATTCGGATGACTTTTGCAATGAACCGCGCGGTTTGGTTTGGTTTGCGGTTTGCATCTCAGCAACCGAACCAAACCAAACCAAACCGCAAGAATGATGAATATTACTTAAACATGTACTAGCCCAATTACATAACTTAAAAATAATCTCTTTTGATTCGATTTTTCCATTGTTGCACCATCAGGTTCGATTCTAATTCCTTTCCATCTCTTTCAATTCATTTCAAGTGATGAATTTGTT
     G TCTAGGGGTGTTC     CGAAC C    C                                                                                                                                                                                                                                                                                                                 
     | |||||||||||||     ||||| |    |                                                                                                                                                                                                                                                                                                                 T
     C GGATCCCCACAAG     CGCCA G    C                                                                                                                                                                                                                                                                                                                 
CTAGA -             -----     C ---- CAAATCAAGCCAAAACTCGTATTTTCAGTAAGTCTGGCGCTCTATTTTTTCGTACACCAAACCAAGCCAACTAAAAATTTTTAAGTAGGTTTGGTTTGGTTACGCCAAACCTAACCAATCCAAACACGTCAAATAGCACTCTATTTTTTATAATGTAATTGAGATTATAACGGTTGAACAATGTTTTATTTGTATCCTATAAAATAAAACAACAAATATACTATTTTATAAACCATTTTGAATATATTTTTATCCATTTTAATTCTTCTTTGTATTCGTACTTTGTTTAATAACTTTTCATTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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