SE2010814

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6016
  • Medicago truncatula
  • SE2010814
  • Tc1/Mariner
  • St14
  • AC130806:51421-51719
  • TA
  • TACTCCCTCCGTCCCTATATATAAGACCCTTTTGCGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                 TA               C   AATTAC  GA -      -----   TG   ------- TTTGTATTAAAGTTGTTTGTAATCACCATTGTTTTTACAATTTTATCCTTTAAGAAAGAAGGTTAGTTTATGTTTTCAACA
TACTCCCTCCGTCCCTA  TATAAGACCCTTTTG GAA      GG  A TTAAGA     TAG  GAT       A                                                                                 
|||||||||||||||||  ||||||||||||||| |||      ||  | ||||||     |||  |||       |                                                                                 T
ATGAGGGAGGCAGGGAT  ATATTCTGGGAAAAC CTT      AA  A AGGGAA     TTC  TAG       A                                                                                 
                 TA               T   -AAAAA  -- C      AAATA   --   GGAAACA TAAAGGTTGATGTAATTAATAAAGAAATATATGTATGGGGATAAATAATATGTAGAAAAAGAAGTTAGTTGTTATTTATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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