SE2030819

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6021
  • Medicago truncatula
  • SE2030819
  • hAT
  • Hat7
  • MtChr2:4219525-4219950
  • CTTGTAGT
  • GGGAACTTCTATGGTACACT

Secondary structure and sequence

TSD    TIR
5'



3'
CTTGTAGTT   -  C              -CACAAT    A     C     CT  -T   TCA      AT    ------      ----- ATCACTTTAATGAAATAAAAAAGTATTTGTCAATATTTATATTTTAGAAAACATCATTTCATAAGAAAAACCATCATTTCATTATTTATAAGGATCATATTACAAAATTTACATTTTGTCATAAAA
         GGG AA TTCTATGGTACACT       TTTG GTGTA CGGTA  CT  GTT   TAAAAT  ATAA      ATTAAA     G                                                                                                                              
         ||| || ||||||||||||||       |||| ||||| |||||  ||  |||   ||||||  ||||      ||||||     |                                                                                                                              A
         CCC TT AAGATACCATGTGG       AAAC CACAT GCCAT  GG  CAA   ATTTTA  TATT      TCAACA     A                                                                                                                              
 TTGATGTT   G  T              ATTATTT    C     A     AT  TT   --C      AT    ATTTAC      AAAAA CTTCTTTTTATTAATAAAAGATAGTAACTGTTGATTCTATTAATTTAAAATATATGGTTTTCAAAGCTGCTTTATTTTAAATTAAAAATTCTTAAAAATAATGAGTATTGTTACTTATAACTAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End