Plant MITE

SE2010820

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6022
Medicago truncatula
SE2010820
Tc1/Mariner
St24
MtChr6:22692916-22693170
TA
TACTCCCTCCGT

Secondary structure and sequence

TSD TIR

5'

3'

         C  CCCAA     AT  CA     GAAAAAATATTTGTCCCAAATTGTATGTCGCTTTACAATACCAATGAAAAATTAATGTTATTTTTCCTATTATATCCTTAACTATTTATTACTCTATCT
TACTCCCTC GT     ATTGT  GT  TTTTA                                                                                                   
||||||||| ||     |||||  ||  |||||                                                                                                    
ATGAGGGAG CA     GTGTG  TA  TAATT                                                                                                   
         A  -----     --  --     TTTTACATTAATTATAACACACCCTTTTATATAATACTCAACAAAATGTTTTAACAGGAGTTATTTACTATACCCTTTCTATTTACTTCCTTTACTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010820

TACTCCCTCCGTCCCAAATTGTATGTCATTTTAGAAAAAATATTTGTCCCAAATTGTATGTCGCTTTACAATACCAATGAAAAATTAATGTTATTTTTCCTATTATATCCTTAACTATTTATTACTCTATCTTTTTCATTTCCTTCATTTATCTTTCCCATATCATTTATTGAGGACAATTTTGTAAAACAACTCATAATATATTTTCCCACACAATATTAATTACATTTTTTAATATGTGTGACAGAGGGAGTA

Copy Cancel