SE2020821

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6023
  • Medicago truncatula
  • SE2020821
  • Mutator
  • M35
  • MtChr2:4851531-4852096
  • AATATATTA
  • AATATATTAGGCTTAATTACACTTTTGGTCCTATCATTTTGACCAACTCACGATAATGGTCATATCTTTTTTAAATCGAACAAAATCGTCCTTAAACTATATGTTTTTTGCAGTTTTAATTCTATTTCCCTATTTCCAACTCCAGAAACGCACAGAAATGACAGTTTTAGTCCAACCACCTATGCTCAAGCATGAAATAAACAAAGAATAAAACATGTGGGTACAAGGAATCTACTTTATTCAGAACACTAACCTAATTTCCGAGACATGTTACA

Secondary structure and sequence

TSD    TIR
5'



3'
         A                       AT          A        TAA                                                              A                C                  G                             C    G              A       A                     C   A  C  A    ------------TAA         C          A  TA
 AATATATT GGCTTAATTACACTTTTGGTCCT  CATTTTGACC ACTCACGA   TGGTCATATCTTTTTTAAATCGAACAAAATCGTCCTTAAACTATATGTTTTTTGCAGTTTTA TTCTATTTCCCTATTT CAACTCCAGAAACGCACA AAATGACAGTTTTAGTCCAACCACCTATG TCAA CATGAAATAAACAA GAATAAA CATGTGGGTACAAGGAATCTA TTT TT AG ACAC               CCTAATTTC GAGACATGTT CA  
 |||||||| |||||||||||||||||||||||  |||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||| ||| || || ||||               ||||||||| |||||||||| ||   
 TTATATAA CCGAATTAATGTGAAAACCAGGA  GTAAAACTGG TGAGTGCT   ACCAGTATGGAGAAAATTTAGCTTGTTTTAGCAGGGATTTGATATACAAAAAACGTCAAAAT AGGATAGAGGGATAAA GTTGAGGTCTTTGCGTGT TTTACTGTCAAAATCAGGTTGGTGGATAC AGTT GTACTTTATTTGTT CTTATTT GTACACCCATGTTCCTTAGAT AAA AA TC TGTG               GGATTAAAG TTCTGTACAA GT  
A        -                       AC          A        TTA                                                              C                A                  A                             A    G              C       A                     T   C  A  G    TTTGGTTCTTTTTGG         A          A  CC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End