Plant MITE

SE2010822

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6024
Medicago truncatula
SE2010822
Tc1/Mariner
St25
MtChr5:3504946-3505223
TA
TACTCCCTCCGGTCTTTAATATAAGAAAATTTTTAAAAAAAGTT

Secondary structure and sequence

TSD TIR

5'

3'

                  A       -   TTT        A   TTTGT     -      GA  A   CAC       --      --      TTACTTAAAAGACTTTTGTATCCCTAATTTAATGACTGTATTTTTA
TACTCCCTCCGGTCTTTA TATAAGA AAA   TTAAAAAA GTT     CCAAT TTATAA  AA TGT   AACTTTT  AAGGTG  TAGTTA                                              
|||||||||||||||||| ||||||| |||   |||||||| |||     ||||| ||||||  || |||   |||||||  ||||||  ||||||                                              A
ATGAGGGAGGCCAGGGAT ATATTCT TTT   GGTTTTTT TAG     GGTTA AATATT  TT ACA   TTGAAAA  TTGTAA  ATGTTT                                              
                  A       A   TTT        G   -TTTT     C      AA  A   ACA       AT      AA      ATATTGGAATATCTTACAACACTTTGTAATTTATGTAAGTGATTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010822

TACTCCCTCCGGTCTTTAATATAAGAAAATTTTTAAAAAAAGTTTTTGTCCAATTTATAAGAAAATGTCACAACTTTTAAGGTGTAGTTATTACTTAAAAGACTTTTGTATCCCTAATTTAATGACTGTATTTTTAATATTAGTGAATGTATTTAATGTTTCACAACATTCTATAAGGTTATATTTGTAAAAATGTTTAAAAAGTTACAACAATTAATTATAACATTGGTTTTGATGTTTTTTGGTTTTTTATCTTATAATAGGGACCGGAGGGAGTA

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