Plant MITE

SE2010823

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6025
Medicago truncatula
SE2010823
Tc1/Mariner
St30
MtChr5:29296224-29296501
TA
TACTCCCTCCATTCTTTTTCTTTTGATGTTTTAGAACTTCAAC

Secondary structure and sequence

TSD TIR

5'

3'

                                  AA   -CA  ---TAT      ---   -   TTGATGTTTTAGTGAATTTATTATTGTTTTCTCAAGTTTACCCTTGTTGGAAAACACAATAAACTATTAAAGTAGTT
TACTCCCTCCATTCTTTTTCTTTTGATGTTTTAG  CTT   AC      ATTCCA   AAA CAT                                                                             
||||||||||||||||||||||||||||||||||  |||   ||      ||||||   ||| |||                                                                              
ATGAGGGAGGTAAGGAAAAGAAAACTACAAAATC  GAA   TG      ATTCCT   TAA TTC                                                                             
                                  GA   CTG  TTCAAA      CAT   T   ATATATTTGTAAACACACAAAAAATGAATTTACAGGAATAAATAGTAATTTAAGTGTACACTATTTGGTTTCCAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010823

TACTCCCTCCATTCTTTTTCTTTTGATGTTTTAGAACTTCAACTATATTCCAAAACATTTGATGTTTTAGTGAATTTATTATTGTTTTCTCAAGTTTACCCTTGTTGGAAAACACAATAAACTATTAAAGTAGTTGTGACCTTTGGTTTATCACATGTGAATTTAATGATAAATAAGGACATTTAAGTAAAAAACACACAAATGTTTATATACTTTAATTACTCCTTAAAACTTGTGTCAAGAGCTAAAACATCAAAAGAAAAGGAATGGAGGGAGTA

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