Plant MITE

SE2010824

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6026
Medicago truncatula
SE2010824
Tc1/Mariner
St6
MtChr5:42116272-42116567
TA
TACTCCCTCCGTCCCGAATTAGCTGAGCCAT

Secondary structure and sequence

TSD TIR

5'

3'

                AAT                  A     CA   A  ----- AG  AAATGTATAAATGAATGAGAGAGAAAAATGGTTTTAAGTGCTCTTGGTAAGTATTGGTGTATTCTCCACTATCATAAATGCAAAGTGGAATA
TACTCCCTCCGTCCCG   TAGCTGAGCCATTTTTTC TTTCA  CAT TT     A  AC                                                                                            
||||||||||||||||   |||||||||||||||||| |||||  ||| ||     |  ||                                                                                            T
ATGAGGGAGGCAGGGT   ATTGACTCGGTAAACATT TTCTT  TTC AC     T  TT                                                                                            
                GTT                  -     --   -  AGGGT --  ATTGGCTCGGTAAAGTGAAAAGTTATGTTATAATTAATGAAAAAAGGGAAATATTGAAATTAATTATGATGAAAGTGTTGAAGGTTAAGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010824

TACTCCCTCCGTCCCGAATTAGCTGAGCCATTTTTTCATTTCACACATATTAAGACAAATGTATAAATGAATGAGAGAGAAAAATGGTTTTAAGTGCTCTTGGTAAGTATTGGTGTATTCTCCACTATCATAAATGCAAAGTGGAATATATTGAATTGGAAGTTGTGAAAGTAGTATTAATTAAAGTTATAAAGGGAAAAAAGTAATTAATATTGTATTGAAAAGTGAAATGGCTCGGTTATTTTGGGACACTTTTCTTTTACAAATGGCTCAGTTATTGTGGGACGGAGGGAGTA

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