SE2020831

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6033
  • Medicago truncatula
  • SE2020831
  • Mutator
  • M9
  • MtChr3:25251138-25251468
  • TTTTTTTTA
  • AGGCTTAATAGCAGTTTTCGCCCCCTAACTTTCACGAAATTACGATTTTGAGCCCCTAAGAAAAAACTACAAAACCGCCCCCTAAGTTTTGCAACTGTAGCAGTTTTGACCCCATAAGGCCAATTTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTTTT                  C   C     C   CAC   A  A        A    -C         ---                            AC   A         A    A            ----     AAAAAAATAAATAAATAA A        A  AC
        AGGCTTAATAGCAGTTTT GCC CCTAA TTT   GAA TT CGATTTTG GCCC  TAAGAAAAA   ACTACAAAACCGCCCCCTAAGTTTTGCA  TGT GCAGTTTTG CCCC TAAGGCCAATTT    TTGGT                  C CGTGGCAC TC  
        |||||||||||||||||| ||| ||||| |||   ||| || |||||||| ||||  |||||||||   ||||||||||||||||||||||||||||  ||| ||||||||| |||| ||||||||||||    |||||                  | |||||||| ||  T
        TCCGAATTATCGTCAAAA CGG GGATT AAA   TTT AA GCTAAAAC CGGG  ATTCTTTTT   TGATGTTTTGGCGGGGGATTCAAAACGT  ACA CGTCAAAAC GGGG GTTCCGGTTAAA    AGCCA                  G GCACCGTG GG  
ATTTTTTT                  T   A     A   AAA   C  C        -    AA         TTT                            AA   C         C    -            ACTG     ------------------ -        -  AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End