SE2020834

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6036
  • Medicago truncatula
  • SE2020834
  • Mutator
  • M93
  • MtChr7:13619498-13619931
  • TTTTCTTTA
  • GTTTAAATATGTCTTTAGTCCTTGCACTTTCATCAGATTTTGGCATTGGTCCCTACACTTTTTTTTGTTTGGAATTGGTCCCTGCACTTTGTAAAAATATTGGTATTGGTCCCTCTGTTAACTTTCTGTTAATAAAAAAACACAAAACTATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTCTTTAG        A    T  A       C                             A          T      A                                                           T       --C         T   TATTGGTCC -    CTTTGTAAAAATATTGGTATTGGTCCCTGCACTTTGTAAAAA
          GTTTAAAT TGTC TT GTCCTTG ACTTTCATCAGATTTTGGCATTGGTCCCT CACTTTTTTT GTTTGG ATTGGTCCCTGCACTTTGTAAAAATATTGGTATTGGTCCCTCTGTTAACTTTCTGTTAA AAAAAAA   ACAAAACTA TGG         T TGCA                                          
          |||||||| |||| || ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||||||| |||         | ||||                                          T
          CAAATTTA ACAG AA CAGGGAC TGAAAGTAGTCTAAAACCGTAACCAGGGA GTGAAAAAAA CAAACC TAACCAGGGACGTGAAACATTTTTATAACCATAACCAGGGAGACAATTGAAAGACAATT TTTTTTT   TGTTTTGGT GCC         T ACGG                                          
ATTTCTTTTA        C    T  C       A                             C          -      G                                                           T       TTT         T   --------- G    TGCACCGGGTTAGTAAAGTGCGGTGCACCGTGGTTATAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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