Plant MITE

SE2010835

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6037
Medicago truncatula
SE2010835
Tc1/Mariner
St4
AC233668:162723-162871
TA
TACTCTCTCCGTTTTCAATTATAAGTAAATTTGACTTTTTAGATTCATTCAATTAATAATGTATTTGGTTCATATTATGGACCACATCCATCGTTAATTGAATGTACCTAAAAAGTTAAATTTGTTTATAATTAACAACGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

             TTC                          ATT            A   T  T        A
TACTCTCTCCGTT   AATTATAAGTAAATTTGACTTTTTAG   CATTCAATTAAT ATG AT TGGTTCAT 
|||||||||||||   ||||||||||||||||||||||||||   |||||||||||| ||| || |||||||| T
ATGAGGGAGGCAA   TTAATATTTGTTTAAATTGAAAAATC   GTAAGTTAATTG TAC TA ACCAGGTA 
             CAA                          CAT            C   C  C        T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2010835

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2010835