SE2020836

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6038
  • Medicago truncatula
  • SE2020836
  • Mutator
  • M73
  • MtChr3:296531-296867
  • GTAAATCAA
  • AAGAATAAAGATTAGTAGACACCCTTAATGTGTACACCCCTTTGTACCACTCTCGAAAATTTCAGTTAACCAATTATATGGTCTGTGTGACCACATTTTTTCTGTTGCGTGACCACTATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAAATC    A   A   TA                   A     C       C    TC                   T     G              A      CT                  -A   GCTGAAAAAAATATGGTCACGCAACTAAAATGCGTG
       AAGA TAA GAT  GTAGACACCCTTAATGTGT CACCC TTTGTAC ACTC  GAAAATTTCAGTTAACCAA TATAT GTCTGTGTGACCAC TTTTTT  GTTGCGTGACCACTATTT  TAA                                    
       |||| ||| |||  ||||||||||||||||||| ||||| ||||||| ||||  ||||||||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||||||||||  |||                                    T
       TTCT GTT CTA  CATCTGTGGGAATTATACA GTGGG AAACATG TGAG  TTTTTAAGGTCAATTGGTT ATATA CAGACACACTGGTG AAAAAA  CAACGCACTGGTGATAAA  GGT                                    
AACTAAA    C   A   TC                   A     C       A    TC                   T     A              C      -T                  AA   ATTAAATAAACCAATTGATTCACCTTTTTTCACCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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