Plant MITE

SE2020837

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6039
Medicago truncatula
SE2020837
Mutator
M36
MtChr2:21876794-21877117
ATATATATA
ATATATATATATATATAGGGATTTGCTAGAACACACCCACTAGTTTTTATGTGGTAGTGTTTTAGCAAG

Secondary structure and sequence

TSD TIR

5'

3'

                 A   A        AAC                  -GT   A             ----C    CCTTAAGGTGTATTTAACTACTTTTTAGTTATAACTTGCTAAAACACACCTTCTAAAAAATAAATGGGTGTATCCTAGCAAATGCC
 ATATATATATATATAT GGG TTTGCTAG   ACACCCACTAGTTTTTAT   GGT GTGTTTTAGCAAG     TACA                                                                                      
 |||||||||||||||| ||| ||||||||   ||||||||||||||||||   ||| |||||||||||||     ||||                                                                                       
 TATATATATATATATA CCC AAACGATC   TGTGGGTGATCAAAAATA   CCA CACAAAATCGTTT     TTGA                                                                                      
A                C   -        CTA                  ATT   -             CTATA    TTTTTCAACAATTTATGTGGAATTCCACTTACAACGATTTTGTGTGTAAGATTTTTTATTCACCCACATACAATCGTTGAGGATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020837

ATATATATATATATATAGGGATTTGCTAGAACACACCCACTAGTTTTTATGTGGTAGTGTTTTAGCAAGCTACACCTTAAGGTGTATTTAACTACTTTTTAGTTATAACTTGCTAAAACACACCTTCTAAAAAATAAATGGGTGTATCCTAGCAAATGCCTATAGGAGTTGCTAACATACACCCACTTATTTTTTAGAATGTGTGTTTTAGCAACATTCACCTTAAGGTGTATTTAACAACTTTTTAGTTATATCTTTGCTAAAACACACCTTAATAAAAACTAGTGGGTGTATCCTAGCAAACCCCATATATATATATATATA

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