SE2050840

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6042
  • Medicago truncatula
  • SE2050840
  • PIF/harbinger
  • To4
  • MtChr1:7399648-7399868
  • TTA
  • AGGCCCCGTTTGGATTGAGCTTATGAAAAAGAGCTTATGCGGATAAATAAGTTTTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     CC         -----------     T   A    G    T             A        --------C     TCATAAATTCTCACTAACGAAAATTGTACCTTCAT
  AGGCC  GTTTGGATT           GAGCT ATG AAAA AGCT ATGCGGATAAATA GTTTTTAT         TTAGT                                   
  |||||  |||||||||           ||||| ||| |||| |||| ||||||||||||| ||||||||         |||||                                   A
  TCCGG  CAAACCTAA           CTCGA TAC TTTT TTGA TACGTTTATTTAT CGAAAATA         AAATA                                   
AT     -A         TGGAATAAAAT     T   G    G    C             A        CATAATAAT     TTCGAACAATTGCATCAAATATTTTTTTTTTTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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