Plant MITE

SE2020845

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6047
Medicago truncatula
SE2020845
Mutator
M76
AC147714:54742-54946
ATATAAATT
TGGGTCCTGCTAACCGGTGCCCCCGGGGCATTGGTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

ATATAAAT    TCC                                CATACCAT             TAGC    A  GA  C   TT    CTTTATTATCAAT
        TGGG   TGCTAACCGGTGCCCCCGGGGCATTGGTTAAG        AAAAGAGAATTAT    ATAA AG  AA TGT  TTGA             
        ||||   ||||||||||||||||||||||||||||||||        |||||||||||||    |||| ||  || |||  ||||              
        ACCC   ACGATTGGCCACGGGGGCCCCGTGACCAATTC        TTTTCTTTTAATA    TATT TC  TT ACG  AACT             
TTAAATAT    TTT                                -CTACACT             ----    A  AA  -   -T    TTATTACATTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020845

ATATAAATTGGGTCCTGCTAACCGGTGCCCCCGGGGCATTGGTTAAGCATACCATAAAAGAGAATTATTAGCATAAAAGGAAACTGTTTTTGACTTTATTATCAATTAATTACATTATTTCAATGCATTAACTATTATATAATTTTCTTTTTCACATCCTTAACCAGTGCCCCGGGGGCACCGGTTAGCATTTCCCATATAAATT

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