SE2020848

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6050
  • Medicago truncatula
  • SE2020848
  • Mutator
  • M26
  • MtChr5:26003407-26003681
  • GTGAAGAAA
  • GAGAAATTCTTGTGTAGGAACGAACCTAACCTATCATCCTTACAAACAACAAATTAAAACATGACACGTCGTTGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGAAGAAA                                    T                                         CTTTTAAAATAA    AAAAAAATAAATCAACTAGTCCTTTCTCTCTCTCTCCACT
         GAGAAATTCTTGTGTAGGAACGAACCTAACCTATCA CCTTACAAACAACAAATTAAAACATGACACGTCGTTGTTTT            TTAT                                        
         |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            ||||                                         
         CTCTTTAAGAACACATCCTTGCTTGGATTGGATAGT GGAATGTTTGTTGTTTAATTTTGTACTGTGCAGCAACAAAA            GGTG                                        
AAAGAAGTG                                    T                                         -----------A    GTACTTACCACAACCACCACTTACCACTACCTTCTACTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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