Plant MITE

SE2020849

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6051
Medicago truncatula
SE2020849
Mutator
M126
AC235756:25569-25762
TTATATTAA
TAAGGGTATTGCTAATCGGTGTCCTCAAGATAATGGTTAAGAAATCTACAAATAAAAATTTTGTCTTAAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TTATAT      TAT           G    -C      ATG      AA     C      ---AAA      CTT      --ATAACAT       TTG
      TAAGGG   TGCTAATCGGT TCCT  AAGATA   GTTAAG  ATCTA AAATAA      TTTTGT   AAAAAT         GTTACTT   
      ||||||   ||||||||||| ||||  ||||||   ||||||  ||||| ||||||      ||||||   ||||||         |||||||    
      ATTCCT   ACGATTAGTCA AGGA  TTCTAT   CAATTC  TAGGT TTTATT      AAAATA   TTTTTA         TAATGAA   
AATTAT      CTT           -    AT      AAA      -G     -      CATTCG      -CT      ACACATTAG       TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020849

TTATATTAAGGGTATTGCTAATCGGTGTCCTCAAGATAATGGTTAAGAAATCTACAAATAAAAATTTTGTCTTAAAAATATAACATGTTACTTTTGATTAAGTAATGATTACACAATTTTTTCATAAAAGCTTACTTATTTTGGATGCTTAACAAATATCTTTAAGGAACTGATTAGCATTCTCCTTATATTAA

Copy Cancel