SE2050854

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6056
  • Medicago truncatula
  • SE2050854
  • PIF/harbinger
  • To2
  • MtChr1:21130200-21130595
  • TAA
  • AGGCTTTGTTTGCGAGTTTGGAGGGGAATGGAGGAGAAGGCTTGGG

Secondary structure and sequence

TSD    TIR
5'



3'
TA            C               T     A        ---   AAAAAATGAATAAGTAA   G    A  A        TGGGA        C  ---  GGG ---  TAACTTTTCTTTATAATACAAAACCCTCCTCATTTGGAGGAACTAAAAAATTGTATTGGAGGAGGGTTTTTGGGAGTTTTGGAGGGTTAATAAGAAT
  AGGCTTTGTTTG GAGTTTGGAGGGGAA GGAGG GAAGGCTT   GGG                 GTG AAGA AT GAGGAAAA     GAGGAGGG TT   TG   T   GT                                                                                                 
  |||||||||||| ||||||||||||||| ||||| ||||||||   |||                 ||| |||| || ||||||||     |||||||| ||   ||   |   ||                                                                                                  
  TCCGAAACAAAC CTCAAACCTCCCCTT CTTTC TTTCCGAA   CCC                 CAC TTTT TA CTCCTTTT     ATCTCTTT GA   TT   T   TA                                                                                                 
AA            C               C     C        ACT   -----------------   G    A  -        ----T        A  AAG  --- TTT  ATTTTCTCATCAAAAAATCTCTTACTATTTAATTACGTATACTAATGAAATAAAAATTAAAATTTTTATAATATTGTTGTATTTAATTTAAACTTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End