SE2020857

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6059
  • Medicago truncatula
  • SE2020857
  • Mutator
  • M52
  • MtChr2:4599738-4600142
  • ATGTATTTT
  • GTATTTTGGCTAAATTGCATTTTTGGTCCCTTAACTATTTAGGTAGTATCGCTTTGGTCCCTTAATTAAAATTCGATTTATTTTGGTATCTTAACTTCTCTCTGTTATACATTTTGGTCCTTTCCGTTAGTTTTAATTCAAAAATGTTGGGTTTCCTTCATCTCCTT

Secondary structure and sequence

TSD    TIR
5'



3'
 AT    TT           C                                                                     A                          T                                       C      CTC   CTCCTC      ATCTTCATATCATCTCCATCA
   GTAT  TGGCTAAATTG ATTTTTGGTCCCTTAACTATTTAGGTAGTATCGCTTTGGTCCCTTAATTAAAATTCGATTTATTTTGGT TCTTAACTTCTCTCTGTTATACATTT GGTCCTTTCCGTTAGTTTTAATTCAAAAATGTTGGGTTT CTTCAT   CTT      TTTTTC                     
   ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||   |||      ||||||                     A
   TATG  ACCGATTTAAC TAAAAACCAGGGAATTGATAAATCCATCATAGCGAAACTAGGGAATTAATTTTAAGCTAAATAAAACCA GGAATTGAAGAGAGGCAATATGTAAA CCAGGAAAGGCAATCAAAATTAAGTTTTTGCAATCTAAA GAAGTA   GAA      AAAAAG                     
TTT    -T           A                                                                     A                          C                                       A      AAA   AACCTT      ACCTTAAGAACAACAACTTCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End