SE2050858

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6060
  • Medicago truncatula
  • SE2050858
  • PIF/harbinger
  • To5
  • AC225519:25442-25805
  • TAT
  • GGGGGTGTTTGTTTCAAGGTTAAGAATGACATTCCCAGGAATACATGGCTAGGGAATGATTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT              CAA  TT  G AT   -             -    G  A        TT   -     ---- TTTGTTATGAGGTTGAGAAAAAAATATTCCTGGGTATAAAGGTTCCTGGGAATTGAGTAACTTCCCATAACTTCCATTATTCGCATGTAAAGAGATGGGAATGTGC
   GGGGGTGTTTGTTT   GG  AA A  GAC ATTCCCAGGAATA CATG CT GGGAATGA  ATA CCCAT    G                                                                                                          
   ||||||||||||||   ||  || |  ||| ||||||||||||| |||| || ||||||||  ||| |||||    |                                                                                                          A
   CCCCCGCAAACAAA   CC  TT T  TTG TAAGGGTCCTTAT GTAT GG CCCTTACT  TAT CTTTT    T                                                                                                          
TAT              -AA  CT  G GT   A             T    G  -        TT   A     AAAC AAGAACCCATAAACAATTTTTTTCACAAACCGTTTATTGAACTGTAAGGACCTTTTTAACCTTCAATGTTAAAAAAAAAATTTTAGATACGTATTATAGTACCCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3