Plant MITE

SE2050859

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6061
Medicago truncatula
SE2050859
PIF/harbinger
To26
MtChr1:27316036-27316265
TAA
AGAGCTTGTTTGAAATAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TA                 G    TGT    --  TTTTTTGAAATATACAAGTTCTCTTTTCATAATGGTTATTATTTTACATGTTTTAGTTTTTTAGTCCCCAAAACTAAAAAAT
  AGAGCTTGTTTGAAATA TTTT   TTTC  AG                                                                                  
  ||||||||||||||||| ||||   ||||  ||                                                                                  T
  TCTCGAACAAACTTTGT AAAG   GTTT  GA                                                                                  
AA                 G    ---    TT  GGAAAAATCAAAAATTTTTGAACTTTTAATTTTTGAATAAATGATTTGATAAAAATTTTAATGTCAAAAACTTTGACAAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050859

TAAGAGCTTGTTTGAAATAGTTTTTGTTTTCAGTTTTTTGAAATATACAAGTTCTCTTTTCATAATGGTTATTATTTTACATGTTTTAGTTTTTTAGTCCCCAAAACTAAAAAATTCTAAACAGTTTCAAAAACTGTAATTTTAAAAATAGTTTAGTAAATAAGTTTTTAATTTTCAAGTTTTTAAAAACTAAAAAGGAGTTTTTGGAAAGTGTTTCAAACAAGCTCTAA

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