Plant MITE

SE2020860

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6062
Medicago truncatula
SE2020860
Mutator
M17
MtChr2:7441229-7441429
TTTGATTTA
GATTTAGAGTAATGATACATAGACACCCTTAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TTT    -T                         AG  GGCA          TG     -  CA  ------------------------------------AAAATC    ACGTAGTC
   GATT  AGAGTAATGATACATAGACACCCTT  AT    ATACACCCTT  ACACC CA  CA                                          TGAC        
   ||||  |||||||||||||||||||||||||  ||    ||||||||||  ||||| ||  ||                                          ||||        A
   TTAG  TCTCATTACTATGTATCTGTGGGAA  TA    TATGTGGGAA  TGTGG GT  GT                                          CACC        
 AT    TT                         -A  AGGG          CA     A  AC  AATCCTTCTCTCTTCTTCTCTATTTTCTCTTTCACACGAACA    CCAGGTGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020860

TTTGATTTAGAGTAATGATACATAGACACCCTTAGATGGCAATACACCCTTTGACACCCACACAAAAATCTGACACGTAGTCACGTGGACCCCACACAAGCACACTTTCTCTTTTATCTCTTCTTCTCTCTTCCTAATGCATGAGGTGTACAAGGGTGTATGGGAATAAAGGGTGTCTATGTATCATTACTCTTTGATTTA

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