Plant MITE

SE2020864

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6066
Medicago truncatula
SE2020864
Mutator
M28
MtChr7:3116574-3116949
AATATTTTT
TTGGCTTAATTGCACTTTTCCCCCCCTATCTTTTGTTAATTGTGCGATTTTGCACCCCCTCTTTTTTTTTTGAGCGATTTTGCACCCTATCTTTTGCCAACTGTGTTTTGT

Secondary structure and sequence

TSD TIR

5'

3'

AATATTT                         C                                          TT                         -   AA  ---GT       TCAAAA     ATTAAAA   G -- AAAAA G - AAAAGATGGGGTGCAAAATCGCTCAAAAAATATAAGTGAGGG
       TTGGCTTAATTGCACTTTTCCCCCC TATCTTTTGTTAATTGTGCGATTTTGCACCCCCTCTTTTTTT  TGAGCGATTTTGCACCCTATCTTTT GCC  CT     GTTTTGT      TCATC       GAG G  G     G G C                                          
       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||  ||     |||||||      |||||       ||| |  |     | | |                                           
       AACCGAATTAACGTGAAAAGGGGGG ATAGAAAACGGTTAACACGCTAAAACGTGGGGGAGAAAAAAA  ACTCGCTAAAACGTGGGGTAGAAAA CGG  GA     TAAAACG      GGTAG       CAC A  T     T A C                                          
TTTTTAT                         -                                          --                         A   GG  AAGAC       ---TGG     ----AAA   - AG ----- - A GTGAAAACAGGGAATAAAAAAACGATTAACACGCTAAAATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020864

AATATTTTTGGCTTAATTGCACTTTTCCCCCCCTATCTTTTGTTAATTGTGCGATTTTGCACCCCCTCTTTTTTTTTTGAGCGATTTTGCACCCTATCTTTTGCCAACTGTGTTTTGTTCAAAATCATCATTAAAAGAGGGGAAAAAGGGCAAAAGATGGGGTGCAAAATCGCTCAAAAAATATAAGTGAGGGTGTAAAATCGCACAATTAGCAAAAAAATAAGGGACAAAAGTGCAATTGAACACAAAGATGGGGTGCAAAATCAGAAAGGGGGCAAAAAGATGGGGTGCAAAATCGCTCAAAAAAAAGAGGGGGTGCAAAATCGCACAATTGGCAAAAGATAGGGGGGAAAAGTGCAATTAAGCCAATATTTTT

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