Plant MITE

SE2020865

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6067
Medicago truncatula
SE2020865
Mutator
M106
MtChr2:23944782-23944984
ATGTATAGT
GTATAGTGAGAAATTCTAATATGGTCACGAGACTAAAGAAAAAGTGTTTGGTCACACACACATAAAGAATTATTTTTTTAATAATAAGGAGGAAATT

Secondary structure and sequence

TSD TIR

5'

3'

 AT     G    AA     AA                  GA  A         TC    A A        ATT        AAT    AGG  GAA   GATAA
   GTATA TGAG  ATTCT  TATGGTCACGAGACTAAA  AA AGTGTTTGG  ACAC C CATAAAGA   ATTTTTTT   AATA   AG   ATT     
   ||||| ||||  |||||  ||||||||||||||||||  || |||||||||  |||| | ||||||||   ||||||||   ||||   ||   |||      
   TATGT ACTC  TAAGA  GTACCAGTGTTCTGGTTT  TT TTATAAACC  TGTG G GTATTTTT   TAAGAGAA   TTAT   TT   TAA     
TGT     -    CA     AG                  AG  A         --    C C        --C        GTT    AAG  -AG   AAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020865

ATGTATAGTGAGAAATTCTAATATGGTCACGAGACTAAAGAAAAAGTGTTTGGTCACACACACATAAAGAATTATTTTTTTAATAATAAGGAGGAAATTGATAAAAAAAAATGATTGAATATTTTGAAGAGAATCTTTTTATGCGCGTGTCCAAATATTATTGATTTGGTCTTGTGACCATGGAAGAATACCTCATGTATTGT

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