Plant MITE

SE2020866

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6068
Medicago truncatula
SE2020866
Mutator
M155
MtChr7:4838429-4838598
AATAAAGAA
GAGCTATGTTATTTGTACATCTAAAATTGGACAACC

Secondary structure and sequence

TSD TIR

5'

3'

AATAAAGAA   CT   T   T  T   TC        G    C AA    ACAACTTTTAA  TTGTGAAGAGCACGGAAAACAAAATCAT
         GAG  ATG TAT TG ACA  TAAAATTG ACAA C  TGCA           TT                            
         |||  ||| ||| || |||  |||||||| |||| |  ||||           ||                             
         CTC  TAC ATA AC TGT  GTTTTAAC TGTT G  TTAT           TG                            
AAAAAATAA   CT   T   C  T   -T        A    A --    -----------  AATAAACGATAAAAATTACTATAAAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020866

AATAAAGAAGAGCTATGTTATTTGTACATCTAAAATTGGACAACCAATGCAACAACTTTTAATTTTGTGAAGAGCACGGAAAACAAAATCATGCAAAATATCATTAAAAATAGCAAATAAGTTATTGATTGTACAATTTTGTTGTTCACATATCATTCCTCAATAAAAAA

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