SE2020870

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6072
  • Medicago truncatula
  • SE2020870
  • Mutator
  • M145
  • MtChr3:39281386-39281616
  • ACACTAGTT
  • ACTAGTTCGGATCAGGATTTGCTGCTGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AC      TC  ATC       G         CAAATT   A     T  -   A     AAA   CA   A  AATCCA        ------     CCAATTCACAGCAC      CA   ATTTT
  ACTAGT  GG   AGGATTT CTGCTGTAG      CAC CAGTT GC CGC GTAGC   TCT  GCC TC      TGATCTGA      CGGTT              AGATTT  ACA     
  ||||||  ||   ||||||| |||||||||      ||| ||||| || ||| |||||   |||  ||| ||      ||||||||      |||||              ||||||  |||     A
  TGATCA  CC   TCCTAAA GACGACATT      GTG GTCAA CG GCG CATCG   AGA  TGG AG      ACTAGACT      GCCAA              TCTAGA  TGT     
CT      CA  CAC       G         ATAAAT   C     -  T   A     ACA   TG   C  ------        TCACTT     -------------T      -C   AACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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