SE2020871

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6073
  • Medicago truncatula
  • SE2020871
  • Mutator
  • M50
  • MtChr4:16074789-16075185
  • TTCTAATTT
  • GGGTTAATAGTGCTTTAACCCCCTGTAATTTAGGTCATTTCTGGTTTTCCCCCTGTAAAATAATTTTTTTGAATTTCATCCTTGTAATACGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTAATTT            C   A       -     T          C       -             -AA        A     A          AC   GATT                       AAAATTTCACCC    T  TTTGAGAAAATTTAGGTTTACCCCCCTTATAATTTGAGCAAATTTTGATTTACCCCC
         GGGTTAATAGTG TTT ACCCCCT GTAAT TAGGTCATTT TGGTTTT CCCCCTGTAAAAT   TTTTTTTG ATTTC TCCTTGTAAT  GAA    TTTTTGGTTTTGGACCTTCATGA            CCTG AG                                                         
         |||||||||||| ||| ||||||| ||||| |||||||||| ||||||| |||||||||||||   |||||||| ||||| ||||||||||  |||    |||||||||||||||||||||||            |||| ||                                                          
         CCCAATTATCAC AAA TGGGGGA CATTA ATCCAGTAAA GCCAAAA GGGGGACATTTTA   AAAAAAAC TAAAG AGGAACATTA  CTT    AAAAACCAAAACCTGGAAGTACT            TAAA AC                                                         
TTTAATCTT            -   A       A     T          A       T             ATA        C     C          AA   --AT                       ------------    -  TGACATGTTTTAGCTTCTATATTGTTCCCCCATTTGACTTTAAACGAGTTTAATTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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