Plant MITE

SE2010872

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6074
Medicago truncatula
SE2010872
Tc1/Mariner
St36
MtChr7:27987650-27987950
TA
TACTCCCTCCGTCCTTGAATAAGTGACCTATTTG

Secondary structure and sequence

TSD TIR

5'

3'

                G         C       TAAAAAATATT   C    AATACTTGACCTTCTCAAATTTCTAAGCAAAATTTGACAGATTTACCCCTTATAAATACTTTTTGTGGTCCCCATGTTAAAGTTTGTAGTGGAACAAAGAA
TACTCCCTCCGTCCTT AATAAGTGA CTATTTG           TGT CCAC                                                                                                     
|||||||||||||||| ||||||||| |||||||           ||| ||||                                                                                                      
ATGAGGGAGGCAGGGA TTATTCACT GATAAAC           AAG TGTG                                                                                                     
                A         A       ------TGGTA   -    TCTAATTCTTTTCACATTTCTATTTTCTTTCTCTCACTATGAAAATGACTCAACGGGAACAGTAATAAAACTTTGAAAAAGTGAAAATTCATTACTAATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010872

TACTCCCTCCGTCCTTGAATAAGTGACCTATTTGTAAAAAATATTTGTCCCACAATACTTGACCTTCTCAAATTTCTAAGCAAAATTTGACAGATTTACCCCTTATAAATACTTTTTGTGGTCCCCATGTTAAAGTTTGTAGTGGAACAAAGAAAGTAATCATTACTTAAAAGTGAAAAAGTTTCAAAATAATGACAAGGGCAACTCAGTAAAAGTATCACTCTCTTTCTTTTATCTTTACACTTTTCTTAATCTGTGTGAAATGGTCAAATAGATCACTTATTAAGGGACGGAGGGAGTA

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