SE2050875

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6077
  • Medicago truncatula
  • SE2050875
  • PIF/harbinger
  • To6
  • MtChr3:20405356-20405704
  • TCA
  • AGACCATCCACAATGATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TC             -T   G --  GCTTAACCTATTTAACACCACATTAAATAGGTACCCCATTGTGGAGTAATATACATGGGTGTCTATGGAGAAGGGTGGCTATGGAAGCACCCTCTCTCTCTCTCTTCATTTTTTGTTGATTTAATTAATAAATCTTAATAAATTAAGTAA
  AGACCATCCACAA  GAT A  GT                                                                                                                                                      
  |||||||||||||  ||| |  ||                                                                                                                                                       
  TCTGGTAGGTGTT  CTG T  GG                                                                                                                                                      
AC             TT   G GA  CTCAACCCACGAATTTACCCAGGGGGTACAGATATAATAATTTAAATGCTATTATGAATTATTCGTAGTTAAAAGAGGTTAGGTTGTGAAGTTTTATTTAATAATTTATCCAGGGTATTTATTAAGATATAGTAATGTAAAGTTGTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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