Plant MITE

SE2020877

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6079
Medicago truncatula
SE2020877
Mutator
M86
MtChr2:412720-412913
TTATTGTTA
AGGCAAATGTTAACTTGTGCCTTCAAAGGGCATATGTTAAGGAACT

Secondary structure and sequence

TSD TIR

5'

3'

TTATTGTT   CAA                 CA                     CGTT    AAATA     ----A      -      CAGTC     CT
        AGG   ATGTTAACTTGTGCCTT  AAGGGCATATGTTAAGGAACT    ATAG     AACTT     TCAAAA GTCGTG     AACTT  
        |||   |||||||||||||||||  |||||||||||||||||||||    ||||     |||||     |||||| ||||||     |||||  C
        TCC   TACAATTGAACACGGGA  TTCCCGTGTACAATTCCTTGG    TATT     TTGAA     AGTTTT TAGCAT     TTGAA  
ATTATTAT   CAG                 --                     ATTT    ---CG     ACGTA      G      -TAAA     AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020877

TTATTGTTAGGCAAATGTTAACTTGTGCCTTCAAAGGGCATATGTTAAGGAACTCGTTATAGAAATAAACTTATCAAAAGTCGTGCAGTCAACTTCTCAAAAGTTAAATTACGATGTTTTGAATGCAAAGTTGCTTATTTTAGGTTCCTTAACATGTGCCCTTAGGGCACAAGTTAACATGACCCTTATTATTA

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