SE2050882

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6084
  • Medicago truncatula
  • SE2050882
  • PIF/harbinger
  • To1
  • MtChr3:20290216-20290572
  • TTA
  • AGAGCATCCACAATGGAGACCCTCAAATTGAAGATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT        C       --   C C   -A   G           C  ATCCCACTTGTACACATCACTTTTTAATTATTTTATAATAACGGTACCTAATAGGTACTCAGTCACTCCAATGGAGATCTTCTAACAAATAGTCTAAATGAGTCCTACCGCTAACTCTTAATCATTTAAAT
  AGAGCATC ACAATGG  AGA C TCA  ATT AAGATCTTAAG GG                                                                                                                                   
  |||||||| |||||||  ||| | |||  ||| ||||||||||| ||                                                                                                                                   T
  TCTCGTAG TGTTACC  TCT G AGT  TAA TTCTGGATCAT GG                                                                                                                                   
AT        A       AC   A A   GG   A           -  ATTATCCATGAGGGTAACACCCTTTTTTTAAACCCCGAGAAGATTCTGTACCCCAGATTAAATTCTCAAATCTGGGGGGTAAAATTCACCAGGGGTATGTGAAAAAATAATTTTATTATACAATCACCACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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