Plant MITE

SE2050884

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6086
Medicago truncatula
SE2050884
PIF/harbinger
To16
MtChr7:28525053-28525383
TTA
AGGGTGTGTTTGGTTTGCAAAACAGTAA

Secondary structure and sequence

TSD TIR

5'

3'

TT                  A   C     ---   --   GACAGAACAGTACAACACAAAGCAGAACAACACAGGACAAATTTTTTATGGCATTGAGTAATTTTTTGTTTTATACGATTTTTGAGGGACAAAATGCTATTTTGGTATTTTAGACAACTTGTACGTG
  AGGGTGTGTTTGGTTTGC AAA AGTAA   GTA  CTG                                                                                                                               
  |||||||||||||||||| ||| |||||   |||  |||                                                                                                                                
  TCCCACGCAAACTAAACG TTT TTATT   TGT  TGT                                                                                                                               
AT                  A   T     CCC   AC   CTTGTTGAGAGCAACAGGTTACAAACTAAACATTTTGACAAAGTCCATGTCCTGTTTGACCTCCGTTCCCTGTCCTGTTTTTGAGTATAAAAACAGGGAGTGGTTTAGTGTCGTGTTGAAAAACAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050884

TTAGGGTGTGTTTGGTTTGCAAAACAGTAAGTACTGGACAGAACAGTACAACACAAAGCAGAACAACACAGGACAAATTTTTTATGGCATTGAGTAATTTTTTGTTTTATACGATTTTTGAGGGACAAAATGCTATTTTGGTATTTTAGACAACTTGTACGTGGGACAAAAAGTTGTGCTGTGATTTGGTGAGGGACAAAAATATGAGTTTTTGTCCTGTCCCTTGCCTCCAGTTTGTCCTGTACCTGAAACAGTTTTACAAATCAAACATTGGACAACGAGAGTTGTTCTGTCATGTCCCTTATTTTTTAGCAAATCAAACGCACCCTTA

Copy Cancel